| Issue Date | Title | Author(s) | Type | Access |
| 1 | 2014 | Structure, growth and production of a remarkably abundant population of the common goby, Pomatoschistus microps (Actinopterygii: Gobiidae) | Souza, A. T. ; Dias, E. ; Campos, J. ; Marques, J. C. ; Martins, I. | article | openAccess |
| 2 | 2013 | Halophytes as sources of metals in estuarine systems with low levels of contamination | Couto, Thiago ; Duarte, Bernardo ; Barroso, Dimitri ; Caçador, I. ; Marques, J. C. | article | openAccess |
| 3 | 2013 | The use of nematodes in assessing ecological conditions in shallow waters surrounding a Mediterranean harbour facility | Losi, V. ; Ferrero, T. J. ; Moreno, M. ; Gaozza, L. ; Rovere, A. ; Firpo, M. ; Marques, J. C. ; Albertelli, G. | article | openAccess |
| 4 | 2003 | Comparison of Talitrus saltator (Amphipoda, Talitridae) biology, dynamics, and secondary production in Atlantic (Portugal) and Mediterranean (Italy and Tunisia) populations | Marques, J. C. ; Gonçalves, S. C. ; Pardal, M. A. ; Chelazzi, L. ; Colombini, I. ; Fallaci, M. ; Bouslama, M. F. ; El Gtari, M. ; Charfi-Cheikhrouha, F. ; Scapini, F. | article | openAccess |
| 5 | 2006 | Feeding ecology, population structure and distribution of Pomatoschistus microps (Krøyer, 1838) and Pomatoschistus minutus (Pallas, 1770) in a temperate estuary, Portugal | Leitão, R. ; Martinho, F. ; Neto, J. M. ; Cabral, H. ; Marques, J. C. ; Pardal, M. A. | article | openAccess |
| 6 | 2004 | Population dynamics of Cyathura carinata (Isopoda) in a eutrophic temperate estuary | Ferreira, S. M. ; Pardal, M. A. ; Lillebø, A. I. ; Cardoso, P. G. ; Marques, J. C. | article | openAccess |
| 7 | 2004 | Phosphorous dynamics in a temperate intertidal estuary | Lillebø, A. I. ; Neto, J. M. ; Flindt, M. R. ; Marques, J. C. ; Pardal, M. A. | article | openAccess |
| 8 | 2007 | Significant variations in the productivity of green macroalgae in a mesotidal estuary: Implications to the nutrient loading of the system and the adjacent coastal area | Martins, Irene ; Lopes, R. J. ; Lillebø, A. I. ; Neto, J. M. ; Pardal, M. A. ; Ferreira, J. G. ; Marques, J. C. | article | openAccess |
| 9 | 1997 | Analysis of the properties of exergy and biodiversity along an estuarine gradient of eutrophication | Marques, J. C. ; Pardal, M. A. ; Nielsen, S. N. ; Jorgensen, S. E. | article | openAccess |
| 10 | Jan-2006 | Population structure and species dynamics of Spisula solida, Diogenes pugilator and Branchiostoma lanceolatum along a temporal–spatial gradient in the south coast of Portugal | Dolbeth, M. ; Viegas, I. ; Martinho, F. ; Marques, J. C. ; Pardal, M. A. | article | openAccess |
| 11 | 2013 | Good Environmental Status of marine ecosystems: What is it and how do we know when we have attained it? | Borja, Angel ; Elliott, Mike ; Andersen, Jesper H. ; Cardoso, Ana C. ; Carstensen, Jacob ; Ferreira, João G. ; Heiskanen, Anna-Stiina ; Marques, J. C. ; Neto, João M. ; Teixeira, Heliana ; Uusitalo, Laura ; Uyarra, María C. ; Zampoukas, Nikolaos | article | openAccess |
| 12 | 2004 | Macroinvertebrate response to different species of macroalgal mats and the role of disturbance history | Cardoso, P. G. ; Pardal, M. A. ; Raffaelli, D. ; Baeta, A. ; Marques, J. C. | article | openAccess |
| 13 | 2004 | Evaluation of the applicability of a marine biotic index to characterize the status of estuarine ecosystems: the case of Mondego estuary (Portugal) | Salas, F. ; Neto, J. M. ; Borja, A. ; Marques, J. C. | article | openAccess |
| 14 | 2003 | Histochemistry and histology in planktonic ecophysiological processes determination in a temperate estuary (Mondego River estuary, Portugal) | Pastorinho, M. R. ; Antunes, C. P. ; Marques, J. C. ; Pereira, M. L. ; Azeiteiro, U. M. M. ; Morgado, F. M. | article | openAccess |
| 15 | 2003 | Bacterioplankton dynamics in the Mondego estuary (Portugal) | Bacelar-Nicolau, P. ; Nicolau, L. B. ; Marques, J. C. ; Morgado, F. ; Pastorinho, R. ; Azeiteiro, U. M. | article | openAccess |
| 16 | 2003 | A model for amphipod (Talitrus saltator) population dynamics | Anastácio, P. M. ; Gonçalves, S. C. ; Pardal, M. A. ; Marques, J. C. | article | openAccess |
| 17 | 2022 | Humboldt's enigma viewed through the lens of ecosystem theory. Explanation by simple principles | Nielsen, S. N. ; Müller, F.; Marques, J. C. | article | openAccess |
| 18 | 2003 | Comparison of the biology, dynamics, and secondary production of Talorchestia brito (Amphipoda, Talitridae) in Atlantic (Portugal) and Mediterranean (Tunisia) populations | Gonçalves, S. C. ; Marques, J. C. ; Pardal, M. A. ; Bouslama, M. F. ; El Gtari, M. ; Charfi-Cheikhrouha, F. | article | openAccess |
| 19 | 2004 | Ascendency as an ecological indicator: a case study of estuarine pulse eutrophication | Patrício, J. ; Ulanowicz, R. ; Pardal, M. A. ; Marques, J. C. | article | openAccess |
| 20 | 2004 | Dynamic changes in seagrass assemblages under eutrophication and implications for recovery | Cardoso, P. G. ; Pardal, M. A. ; Lillebø, A. I. ; Ferreira, S. M. ; Raffaelli, D. ; Marques, J. C. | article | openAccess |
| 21 | 2002 | The effect of different primary producers on Hydrobia ulvae population dynamics: a case study in a temperate intertidal estuary | Cardoso, P. G. ; Lillebø, A. I. ; Pardal, M. A. ; Ferreira, S. M. ; Marques, J. C. | article | openAccess |
| 22 | 2005 | Biology, population dynamics and secondary production of the green crab Carcinus maenas (L.) in a temperate estuary | Baeta, A. ; Cabral, H. N. ; Neto, J. M. ; Marques, J. C. ; Pardal, M. A. | article | openAccess |
| 23 | 2000 | Impact of crayfish densities on wet seeded rice and the inefficiency of a non-ionic surfactant as an ecotechnological solution | Anastácio, P. M. ; Frias, A. F. ; Marques, J. C. | article | openAccess |
| 24 | 2001 | Modeling mosquitofish (Gambusia holbrooki) responses to Genapol OXD-080, a non-ionic surfactant, in rice fields | Cabral, J. A. ; Marques, J. C. ; Nielsen, S. N. | article | openAccess |
| 25 | 1999 | CRISP (crayfish and rice integrated system of production): 1. Modelling rice (Oryza sativa) growth and production | Anastácio, P. M. ; Frias, A. F. ; Marques, J. C. | article | openAccess |
| 26 | 2000 | Surfactant (Genapol OX-80) toxicity to Selenastrum capricornutum | Anastácio, P. M. ; Holten Lützhøft, H. -C. ; Halling-Sørensen, B. ; Marques, J. C. | article | openAccess |
| 27 | 1999 | CRISP (crayfish and rice integrated system of production): 2. Modelling crayfish (Procambarus clarkii) population dynamics | Anastácio, P. M. ; Nielsen, S. N. ; Marques, J. C. | article | openAccess |
| 28 | 2013 | Abiotic modulation of Spartina maritima photobiology in different latitudinal populations | Duarte, B. ; Couto, Thiago ; Freitas, J. ; Valentim, J. ; Silva, H. ; Marques, J. C. ; Dias, J. M. ; Caçador, I. | article | openAccess |
| 29 | Dec-2005 | Management of a shallow temperate estuary to control eutrophication: The effect of hydrodynamics on the system’s nutrient loading | Lillebø, A. I. ; Neto, J. M. ; Martins, I. ; Verdelhos, T. ; Leston, S. ; Cardoso, P. G. ; Ferreira, S. M. ; Marques, J. C. ; Pardal, M. A. | article | openAccess |
| 30 | 2007 | Applying quality status criteria to a temperate estuary before and after the mitigation measures to reduce eutrophication symptoms | Lillebø, A. I. ; Teixeira, H. ; Pardal, M. A. ; Marques, J. C. | article | openAccess |
| 31 | 2005 | Impact of microphallid trematodes on the survivorship, growth, and reproduction of an isopod (Cyathura carinata) | Ferreira, S. M. ; Jensen, K. T. ; Martins, P. A. ; Sousa, S. F. ; Marques, J. C. ; Pardal, M. A. | article | openAccess |
| 32 | 2008 | Ecological status assessment in the lower Eo estuary (Spain). The challenge of habitat heterogeneity integration: A benthic perspective | Paz, L. de ; Patrício, J. ; Marques, J. C. ; Borja, A. ; Laborda, A. J. | article | openAccess |
| 33 | 2006 | Are Taxonomic Distinctness measures compliant to other ecological indicators in assessing ecological status? | Salas, F. ; Patrício, J. ; Marcos, C. ; Pardal, M. A. ; Pérez-Ruzafa, A. ; Marques, J. C. | article | openAccess |
| 34 | 2006 | Assessing the health of coastal marine ecosystems: A holistic approach based on sediment micro and meio-benthic measures | Vassallo, P. ; Fabiano, M. ; Vezzulli, L. ; Sandulli, R. ; Marques, J. C. ; Jørgensen, S. E. | article | openAccess |
| 35 | 18-Apr-2000 | Impact of eutrophication on the life cycle, population dynamics and production of Ampithoe valida (Amphipoda) along an estuarine spatial gradient (Mondego estuary, Portugal) | Pardal, M. A. ; Marques, J. C. ; Metelo, I. ; Lillebø, A. I. ; Flindt, M. R. | article | openAccess |
| 36 | 2005 | The effect of eutrophication abatement on the bivalve Scrobicularia plana | Verdelhos, T. ; Neto, J. M. ; Marques, J. C. ; Pardal, M. A. | article | openAccess |
| 37 | 2005 | Application of the exergy index as ecological indicator of organically enrichment areas in the Mar Menor lagoon (south-eastern Spain) | Salas, F. ; Marcos, C. ; Pérez-Ruzafa, A. ; Marques, J. C. | article | openAccess |
| 38 | 2001 | Opinion – Thermodynamics and Eecosystem Theory, Case Studies from Hydrobiology | Jørgensen, S. E. ; Marques, J. C. | article | openAccess |
| 39 | 2007 | Opportunistic macroalgae metrics for transitional waters. Testing tools to assess ecological quality status in Portugal | Patrício, J. ; Neto, J. M. ; Teixeira, H. ; Marques, J. C. | article | openAccess |
| 40 | 2006 | User-friendly guide for using benthic ecological indicators in coastal and marine quality assessment | Salas, F. ; Marcos, C. ; Neto, J. M. ; Patrício, J. ; Pérez-Ruzafa, A. ; Marques, J. C. | article | openAccess |
| 41 | 2008 | Response of intertidal macrobenthic communities to long term human induced changes in the Eo estuary (Asturias, Spain): Implications for environmental management | Paz, L. de ; Neto, J. M. ; Marques, J. C. ; Laborda, A. J. | article | openAccess |
| 42 | 2004 | Temporal and spatial change of exergy and ascendency in different benthic marine ecosystems | Fabiano, M. ; Vassallo, P. ; Vezzulli, L. ; Salvo, V. S. ; Marques, J. C. | article | openAccess |
| 43 | 2014 | Taxonomic resolution and Biological Traits Analysis (BTA) approaches in estuarine free-living nematodes | Alves, A. S. ; Verissimo, H. ; Costa, M. J. ; Marques, J. C. | article | openAccess |
| 44 | 2013 | Marine research in the Iberian Peninsula: A pledge for better times after an economic crisis | Borja, Angel ; Marques, J. C. ; Olabarria, Celia ; Quintino, Victor | article | openAccess |
| 45 | 2013 | Polar marine biology science in Portugal and Spain: Recent advances and future perspectives | Xavier, José C. ; Barbosa, Andrés ; Agustí, Susana ; Alonso-Sáez, Laura ; Alvito, Pedro ; Ameneiro, Julia ; Ávila, Conxita ; Baeta, Alexandra ; Canário, João ; Carmona, Raquel ; Catry, Paulo ; Ceia, Filipe ; Clark, Melody S. ; Cristobo, Francisco J. ; Cruz, Bruno ; Duarte, Carlos M. ; Figuerola, Blanca ; Gili, Josep-Maria ; Gonçalves, Ana R. ; Gordillo, Francisco J. L. ; Granadeiro, José P. ; Guerreiro, Miguel ; Isla, Enrique ; Jiménez, Carlos ; López-González, Pablo J, ; Lourenço, Sílvia ; Marques, J. C. ; Moreira, Elena ; Mota, Ana M. ; Nogueira, Marta ; Núñez-Pons, Laura ; Orejas, Covadonga ; Paiva, Vitor H. ; Palanques, Albert ; Pearson, Gareth A. ; Pedrós-Alió, Carlos ; Cantero, Álvaro L. Peña ; Power, Deborah M. ; Ramos, J. A. ; Rossi, Sergi ; Seco, José ; Sañé, Elisabet ; Serrão, Ester A. ; Taboada, Sergi ; Tavares, Sílvia ; Teixidó, Núria ; Vaqué, Dolors ; Valente, Tiago ; Vásquez, Elsa ; Vieira, Rui P. ; Viñegla, Benjamin | article | openAccess |
| 46 | 2014 | Systematic processes of land use/land cover change to identify relevant driving forces: Implications on water quality | Teixeira, Zara ; Teixeira, Heliana ; Marques, J. C. | article | openAccess |
| 47 | 2014 | Biophysical probing of Spartina maritima photo-system II changes during prolonged tidal submersion periods | Duarte, B. ; Santos, B. ; Marques, J. C. ; Caçador, I. | article | openAccess |
| 48 | 2014 | Temporal changes in macrofauna as response indicator to potential human pressures on sandy beaches | Bessa, Filipa ; Gonçalves, Sílvia C. ; Franco, João N. ; André, José N. ; Cunha, Pedro P. ; Marques, J. C. | article | openAccess |
| 49 | 2013 | Tagus estuary salt marshes feedback to sea level rise over a 40-year period: Insights from the application of geochemical indices | Duarte, B. ; Caçador, I. ; Marques, J. C. ; Croudace, I. W. | article | openAccess |
| 50 | 2001 | Hydrodynamics as a Major Factor Controlling the Occurrence of Green Macroalgal Blooms in a Eutrophic Estuary: A Case Study on the Influence of Precipitation and River Management | Martins, I. ; Pardal, M. A. ; Lillebø, A. I. ; Flindt, M. R. ; Marques, J. C. | article | openAccess |
